RINSE - Registry of non-native species in the Two Seas region countries (Great Britain, France, Belgium and the Netherlands)

Rationale

This repository contains the functionality to standardize the data of Zieritz et al. (2014) to a Darwin Core checklist that can be harvested by GBIF. It was developed for the TrIAS project.

Workflow

source data (downloaded as Supplementary Material 1) → Darwin Core mapping script → generated Darwin Core files

Published datasets

• Dataset on the IPT
• Dataset on GBIF

Repo structure

The repository structure is based on Cookiecutter Data Science. Files and directories indicated with GENERATED should not be edited manually.

├── README.md         : Description of this repository
├── LICENSE           : Repository license
├── .gitignore        : Files and directories to be ignored by git
│
├── data
│   ├── raw           : Source data, input for mapping script
│   └── processed     : Darwin Core output of mapping script GENERATED
│
├── docs              : Repository website GENERATED
│
└── src
    ├── dwc_mapping.Rmd  : Darwin Core mapping script, core functionality of this repository
    └── src.Rproj        : RStudio project file

Installation

1. Clone this repository to your computer
2. Open the RStudio project file
3. Open the dwc_mapping.Rmd R Markdown file in RStudio
4. Install any required packages
5. Click Run > Run All to generate the processed data
6. Alternatively, click Build > Build website to generate the processed data and build the website in /docs

Contributors

List of contributors

License

MIT License