Package index • trias

Checklist based functions

gbif_get_taxa(): Get taxa information from GBIF
gbif_has_distribution(): Compare desired distribution information with actual one
gbif_verify_keys(): Check keys against GBIF Backbone Taxonomy
get_nubkeys(): Retrieve unique GBIF Backbone taxon keys from a species checklist
get_table_pathways(): Pathway count indicator table
indicator_introduction_year(): Plot the number of new introductions per year
indicator_native_range_year(): Create an interactive plot for the number of alien species per native region and year of introduction
indicator_total_year(): Plot the cumulative number of alien species per year
pathways_cbd() deprecated: Pathways of introduction as defined by CBD
verify_taxa(): Verify taxa that the GBIF Backbone Taxonomy does not recognize or will lump
visualize_pathways_level1(): Plot number of introduced taxa for CBD pathways level 1
visualize_pathways_level2(): Plot number of introduced taxa for CBD pathways level 2
visualize_pathways_year_level1(): Plot number of introduced taxa over time for pathways level 1
visualize_pathways_year_level2(): Plot number of introduced taxa over time for pathways level 2

apply_decision_rules(): Apply decision rules to time series and assess emerging status
apply_gam(): Apply GAM to time series and assess emerging status