• 1 Get taxa from checklists
    • 1.1 Choose checklists
    • 1.2 Get taxa
    • 1.3 Filter on distributions
    • 1.4 Get GBIF backbone taxonomy information
    • 1.5 Show summary and save
  • 2 Get related information
    • 2.1 Read taxa
    • 2.2 Get distributions
    • 2.3 Get species profiles
    • 2.4 Get descriptions
  • 3 Verify taxa
    • 3.1 Read taxa
    • 3.2 Read verification information
    • 3.3 Run and save verification
    • 3.4 Show verification status
      • 3.4.1 Unmatched taxa
      • 3.4.2 Synonyms
      • 3.4.3 Accepted taxa
      • 3.4.4 Erroneous verificationKeys
      • 3.4.5 Additional information
  • 4 Unify taxa
    • 4.1 Read taxa
    • 4.2 Unify taxa
    • 4.3 Get GBIF backbone taxonomy information
    • 4.4 Explicitly remove incorrect taxa
  • 5 Unify related information
    • 5.1 Read data
    • 5.2 Assign checklist order
    • 5.3 Unify distribution
    • 5.4 Unify species profiles
    • 5.5 Unify descriptions
      • 5.5.1 Native range
      • 5.5.2 Degree of establishment
      • 5.5.3 Combine and process descriptions
  • 6 Darwin Core mapping
    • 6.1 Read unified data
    • 6.2 Preview data
    • 6.3 How we cite our sources
    • 6.4 Taxon core
      • 6.4.1 Pre-processing
      • 6.4.2 Term mapping
      • 6.4.3 Post-processing
    • 6.5 Distribution extension
      • 6.5.1 Pre-processing
      • 6.5.2 Term mapping
      • 6.5.3 Post-processing
    • 6.6 Species profile extension
      • 6.6.1 Term mapping
      • 6.6.2 Post-processing
    • 6.7 Description extension
      • 6.7.1 Pre-processing
      • 6.7.2 Term mapping
      • 6.7.3 Post-processing
  • 7 GRIIS mapping
    • 7.1 Read Darwin Core data
    • 7.2 GRIIS format
      • 7.2.1 Pre-processing
      • 7.2.2 Term mapping
      • 7.2.3 eventDate
    • 7.3 Post-processing
  • 8 Get synonyms of all accepted taxa
    • 8.1 Get unified taxa
    • 8.2 Find synonyms

Global Register of Introduced and Invasive Species - Belgium

2 Get related information

In this chapter we retrieve related information for taxa on the checklists (with a valid distribution).

2.1 Read taxa

  1. Read taxa from data/interim/taxa_with_verification.csv.

  2. Extract taxonKeys as a vector.

2.2 Get distributions

This was already done in 1.3, where only distributions of interest were kept.

2.3 Get species profiles

  1. Get species profiles for our taxa from GBIF.

  2. Save to CSV.

2.4 Get descriptions

  1. Get descriptions for our taxa from GBIF.

  2. Save to CSV.